PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03805.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 194aa    MW: 22194.4 Da    PI: 10.2781
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03805.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.3e-0681103123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C+ C+k F r  nL+ H r H
  Rsa1.0_03805.1_g00003.1  81 FICEVCNKGFQREQNLQLHRRGH 103
                              89*******************88 PP

2zf-C2H215.16.8e-05157179123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C+k++  +s+ k H +t+
  Rsa1.0_03805.1_g00003.1 157 WKCEKCSKRYAVQSDWKAHSKTC 179
                              58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.52E-880103No hitNo description
SMARTSM003550.005281103IPR015880Zinc finger, C2H2-like
PfamPF121717.0E-681103IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9981103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355110122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-6145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.52E-8152177No hitNo description
SMARTSM00355130157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAASSSSSAS FFGVREDDQS HLLPLNPPAT VPPPPHHQPL QSQQPLEAPP QKKKRNQPRT  60
PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKSTKEVKRK  120
VYLCPEPTCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG  180
TKEYRCDCGT LFSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6214950.0AJ621495.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 2 (idz2 gene).
GenBankAY0561740.0AY056174.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
GenBankBT0012150.0BT001215.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612375.11e-127PREDICTED: protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-111IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0D3E7J01e-126A0A0D3E7J0_BRAOL; Uncharacterized protein
STRINGBra040974.1-P1e-125(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-109indeterminate(ID)-domain 5